J-factors of short DNA molecules

The propensity of short DNA sequences to convert to the circular form is studied by a mesoscopic Hamiltonian method which incorporates both the bending of the molecule axis and the intrinsic twist of the DNA strands. The base pair fluctuations with respect to the helix diameter are treated as path trajectories in the imaginary time path integral formalism. The partition function for the sub-ensemble of closed molecules is computed by imposing chain ends boundary conditions both on the radial fluctuations and on the angular degrees of freedom. The cyclization probability, the J-factor, proves to be highly sensitive to the stacking potential, mostly to its nonlinear parameters. We find that the J-factor generally decreases by reducing the sequence length ( N ) and, more significantly, below N = 100 base pairs. However, even for very small molecules, the J-factors remain sizeable in line with recent experimental indications. Large bending angles between adjacent base pairs and anharmonic stacking appear as the causes of the helix flexibility at short length scales.Comment: The Journal of Chemical Physics - May 2016 ; 9 page

The jet quenching in high energy nuclear collisions and quark-gluon plasma

e investigate the energy loss of quark and gluon jets in quark-gluon plasma produced in central Au+Au collisions at RHIC energy. We use the physical characteristic of initial and mixed phases, which were found in effective quasiparticle model for SPS and RHIC energy. At investigation of energy loss we take into account also the production of hot glue at first stage. The energy loss in expanding plasma is calculated in dominant first order of radiation intensity with accounting of finite kinematic bounds. We calculate the suppression of $\pi^0$ - spectra with moderate high $p_{\perp}$, which is caused by energy loss of quark and gluon jets. The comparison with suppression of $\pi^0$ reported by PHENIX show, that correct quantitative description of suppression we have only in model of phase transition with decrease of thermal gluon mass and effective coupling $G(T)$ in region of phase transition plasma into hadrons (at $T \simeq T_c$). However quasiparticle model with increase of these values at $T \to T_c$ in accordance with perturbative QCD lead to too great energy loss of gluon and quark jets, which disagrees with data on suppression of $\pi^0$. Thus it is possible with help of hard processes to investigate the structure of phase transition. We show also, that energy losses at SPS energy are too small in order to be observable. This is caused in fact by sufficiently short plasma phase at this energy.Comment: 17 pages, 3 figures, 2 table

Dynamic shear suppression in quantum phase space

© 2019 American Physical Society. All rights reserved.Classical phase space flow is inviscid. Here we show that in quantum phase space Wigner's probability current J can be effectively viscous. This results in shear suppression in quantum phase space dynamics which enforces Zurek's limit for the minimum size scale of spotty structures that develop dynamically. Quantum shear suppression is given by gradients of the quantum terms of J's vorticity. Used as a new measure of quantum dynamics applied to several evolving closed conservative 1D bound state systems, we find that shear suppression explains the saturation at Zurek's scale limit and additionally singles out special quantum states.Peer reviewe

Propagation of Vortex Electron Wave Functions in a Magnetic Field

The physics of coherent beams of photons carrying axial orbital angular momentum (OAM) is well understood and such beams, sometimes known as vortex beams, have found applications in optics and microscopy. Recently electron beams carrying very large values of axial OAM have been generated. In the absence of coupling to an external electromagnetic field the propagation of such vortex electron beams is virtually identical mathematically to that of vortex photon beams propagating in a medium with a homogeneous index of refraction. But when coupled to an external electromagnetic field the propagation of vortex electron beams is distinctly different from photons. Here we use the exact path integral solution to Schrodingers equation to examine the time evolution of an electron wave function carrying axial OAM. Interestingly we find that the nonzero OAM wave function can be obtained from the zero OAM wave function, in the case considered here, simply by multipling it by an appropriate time and position dependent prefactor. Hence adding OAM and propagating can in this case be replaced by first propagating then adding OAM. Also, the results shown provide an explicit illustration of the fact that the gyromagnetic ratio for OAM is unity. We also propose a novel version of the Bohm-Aharonov effect using vortex electron beams.Comment: 14 pages, 2 figures, submitted to Phys Rev

Heat Fluctuations in Brownian Transducers

Heat fluctuation probability distribution function in Brownian transducers operating between two heat reservoirs is studied. We find, both analytically and numerically, that the recently proposed Fluctuation Theorem for Heat Exchange [C. Jarzynski and D. K. Wojcik, Phys. Rev. Lett. 92, 230602 (2004)] has to be modified when the coupling mechanism between both baths is considered. We also extend such relation when external work is present. Our work fixes the domain of applicability of the theorem in more realistic operating systems.Comment: Comments are welcom

Unconventional strongly interacting Bose-Einstein condensates in optical lattices

Feschbach resonances in a non-s-wave channel of two-component bosonic mixtures can induce atomic Bose Einstein condensates with a non-zero orbital momentum in the optical lattice, if one component is in the Mott insulator state and the other is not. Such non-s-wave condensates break the symmetry of the lattice and, in some cases, time-reversal symmetry. They can be revealed in specific absorption imaging patterns.Comment: Replaced with revised version. References are adde

Connecting the discrete and continuous-time quantum walks

Recently, quantized versions of random walks have been explored as effective elements for quantum algorithms. In the simplest case of one dimension, the theory has remained divided into the discrete-time quantum walk and the continuous-time quantum walk. Though the properties of these two walks have shown similarities, it has remained an open problem to find the exact relation between the two. The precise connection of these two processes, both quantally and classically, is presented. Extension to higher dimensions is also discussed.Comment: 5 pages, 1 figur

Particle-wave duality: a dichotomy between symmetry and asymmetry

Symmetry plays a central role in many areas of modern physics. Here we show that it also underpins the dual particle and wave nature of quantum systems. We begin by noting that a classical point particle breaks translational symmetry whereas a wave with uniform amplitude does not. This provides a basis for associating particle nature with asymmetry and wave nature with symmetry. We derive expressions for the maximum amount of classical information we can have about the symmetry and asymmetry of a quantum system with respect to an arbitrary group. We find that the sum of the information about the symmetry (wave nature) and the asymmetry (particle nature) is bounded by log(D) where D is the dimension of the Hilbert space. The combination of multiple systems is shown to exhibit greater symmetry and thus more wavelike character. In particular, a class of entangled systems is shown to be capable of exhibiting wave-like symmetry as a whole while exhibiting particle-like asymmetry internally. We also show that superdense coding can be viewed as being essentially an interference phenomenon involving wave-like symmetry with respect to the group of Pauli operators.Comment: 20 pages, 3 figure

On the Creation of the Universe out of Nothing

We explain how the Universe was created with no expenditure of energy or initial mass.Comment: To be presented at IWARA 2009 (4th International Workshop on Astronomy and Relativistic Astrophysics), to be held in Brazil, October 200

Realizable Hamiltonians for Universal Adiabatic Quantum Computers

It has been established that local lattice spin Hamiltonians can be used for universal adiabatic quantum computation. However, the 2-local model Hamiltonians used in these proofs are general and hence do not limit the types of interactions required between spins. To address this concern, the present paper provides two simple model Hamiltonians that are of practical interest to experimentalists working towards the realization of a universal adiabatic quantum computer. The model Hamiltonians presented are the simplest known QMA-complete 2-local Hamiltonians. The 2-local Ising model with 1-local transverse field which has been realized using an array of technologies, is perhaps the simplest quantum spin model but is unlikely to be universal for adiabatic quantum computation. We demonstrate that this model can be rendered universal and QMA-complete by adding a tunable 2-local transverse XX coupling. We also show the universality and QMA-completeness of spin models with only 1-local Z and X fields and 2-local ZX interactions.Comment: Paper revised and extended to improve clarity; to appear in Physical Review